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Web 3DNA 2.0 for the analysis, visualization, and modeling of 3D nucleic acid structures |
- 3DNA Home — the home page of the 3DNA software package
- 3DNA Forum — online discusions of 3DNA-related questions
- Web DSSR — a webserver for DSSR (Dissecting the Spatial Structure of RNA)
- do_x3dna — software built on top of 3DNA for the analysis of DNA/RNA molecular dynamics simulations
- 3D-DART (3DNA-Driven DNA Analysis and Rebuilding Tool) — a server for generating 3D structural models of double-stranded DNA
- Phenix — a software suite for the automated determination of molecular structures using X-ray crystallography and other methods. Web 3DNA 2.0 employs the "phenix.geometry_minimization" command to optimize backbone geometry while keeping base atoms fixed
- Curves+ — a popular approach for analyzing the structures of nucleic acids
- NAB (Nucleic Acid Builder) — a molecular manipulation language for constructing 3D structures of nucleic acids
- make-na server — a web-based automated tool for making nucleic acid helices powered by NAB
- NUCGEN-Plus — a web-server for generating sequence-dependent nonuniform nucleic acid structures
- NUPARM — a program for analyzing sequence-dependent variations in nucleic acid (DNA & RNA) double helices
- RCSB PDB — a database about 3D shapes of proteins, nucleic acids, and complex assemblies that helps students and researchers understand all aspects of biomedicine and agriculture, from protein synthesis to health and disease
- Nucleic Acid Database — a database containing information about experimentally-determined nucleic acids and complex assemblies